Node 60
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	0.93	0.01	0.06	0	A	0.93
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.27	0	0.73	T	0.73
10	0.01	0.99	0	0.01	C	0.99
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.04	0	0.96	T	0.96
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	0.99	0	0.01	C	0.99
19	0	0.11	0	0.89	T	0.89
20	0	0	0	1	T	1
21	0.9	0	0.1	0	A	0.9
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.79	0	0.21	0	A	0.79
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0	0	1	0	G	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.84	0	0.16	C	0.84
31	0.01	0.99	0	0	C	0.99
32	0.38	0	0.62	0	G	0.62
33	0.06	0.02	0.91	0	G	0.91
34	0	0.95	0.02	0.02	C	0.95
35	0.99	0	0.01	0	A	0.99
36	0.09	0	0.9	0	G	0.9
37	0.12	0.11	0.77	0.01	G	0.77
38	0	0	0	1	T	1
39	0	0.09	0	0.91	T	0.91
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.73	0	0.27	C	0.73
43	0	1	0	0	C	1
44	0.03	0.91	0.06	0	C	0.91
45	0	0.66	0	0.34	C	0.66
46	0.22	0.01	0.01	0.76	T	0.76
47	0	0.98	0.01	0	C	0.98
48	0	0.83	0	0.16	C	0.83
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.4	0.12	0.16	0.32	A	0.4
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0.04	0.79	0.12	0.05	C	0.79
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.98	0	0.02	0	A	0.98
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.13	0	0.87	0	G	0.87
71	0	0	0	1	T	1
72	0.07	0.05	0.13	0.75	T	0.75
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.04	0.19	0.72	0.04	G	0.72
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.03	0	0.97	T	0.97
82	0.85	0	0.15	0	A	0.85
83	1	0	0	0	A	1
84	0.57	0.15	0.16	0.12	A	0.57
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.83	0	0.17	C	0.83
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.97	0	0.03	C	0.97
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.98	0	0.02	C	0.98
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.9	0	0.1	C	0.9
100	0	1	0	0	C	1
101	0.98	0	0.02	0	A	0.98
102	0.01	0.01	0.98	0	G	0.98
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.02	0.86	0.04	0.09	C	0.86
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.08	0.04	0.87	0.01	G	0.87
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.19	0.77	0.03	G	0.77
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.48	0	0.52	T	0.52
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.01	0.87	0.08	0.04	C	0.87
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.6	0	0.4	C	0.6
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.32	0.01	0.67	T	0.67
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.31	0.02	0.64	0.03	G	0.64
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.1	0	0.9	0.01	G	0.9
137	0	1	0	0	C	1
138	0	0.84	0.01	0.15	C	0.84
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.04	0	0.96	T	0.96
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.97	0	0.03	C	0.97
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0.01	0	0.99	0	G	0.99
148	0.09	0	0.91	0	G	0.91
149	0.95	0.05	0.01	0	A	0.95
150	0.58	0.17	0.23	0.02	A	0.58
151	1	0	0	0	A	1
152	0	1	0	0	C	1
153	0.11	0.58	0.2	0.11	C	0.58
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.91	0	0.08	C	0.91
157	0.89	0.01	0.07	0.03	A	0.89
158	0.01	0.96	0.02	0.01	C	0.96
159	0	0.93	0	0.07	C	0.93
160	0.95	0	0.05	0	A	0.95
161	0	1	0	0	C	1
162	0.03	0.68	0.25	0.04	C	0.68
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.99	0	0.01	0	A	0.99
167	0	1	0	0	C	1
168	0	0.96	0	0.04	C	0.96
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.56	0	0.44	C	0.56
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.04	0	0.96	0	G	0.96
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.01	0	0.99	0	G	0.99
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.49	0	0.51	T	0.51
181	0.01	0	0.99	0	G	0.99
182	0	0.03	0	0.97	T	0.97
183	0	0.99	0	0.01	C	0.99
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.03	0.62	0.15	0.2	C	0.62
187	0	1	0	0	C	1
188	1	0	0	0	A	1
189	0	0.07	0	0.93	T	0.93
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.97	0	0.03	C	0.97
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.9	0	0.1	C	0.9
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.54	0	0.46	C	0.54
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.27	0	0.73	T	0.73
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.22	0	0.77	0	G	0.77
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.01	0	0.99	T	0.99
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.02	0	0.98	0	G	0.98
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0.07	0	0.93	0	G	0.93
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.18	0.09	0.71	0.02	G	0.71
226	0.01	0.89	0.04	0.06	C	0.89
227	0.95	0.03	0.02	0	A	0.95
228	0.03	0	0.97	0	G	0.97
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.91	0	0.09	0	A	0.91
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	0.99	0	0.01	0	A	0.99
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0	0.03	0	0.96	T	0.96
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.91	0	0.09	0	A	0.91
241	0	0	0	0.99	T	0.99
242	0.27	0	0	0.73	T	0.73
243	0	0.17	0	0.82	T	0.82
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.02	0.73	0.21	0.05	C	0.73
247	0.02	0.02	0.95	0.01	G	0.95
248	0	0.99	0	0.01	C	0.99
249	0.04	0.8	0.07	0.09	C	0.8
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.17	0	0.83	0	G	0.83
254	0.81	0.01	0.18	0	A	0.81
255	0.06	0.4	0.27	0.26	C	0.4
256	0.3	0.51	0.17	0.02	C	0.51
257	0.86	0.1	0.03	0.01	A	0.86
258	0.03	0	0.97	0	G	0.97
259	0	0.94	0	0.06	C	0.94
260	0	0	0	1	T	1
261	0.03	0	0.97	0	G	0.97
262	0	1	0	0	C	1
263	0.99	0	0.01	0	A	0.99
264	0.02	0	0.98	0	G	0.98
265	0.23	0	0.77	0	G	0.77
266	0	0.38	0	0.62	T	0.62
267	0.14	0.07	0.78	0.01	G	0.78
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.04	0.04	0.86	0.06	G	0.86
271	0	0	1	0	G	1
272	1	0	0	0	A	1
273	0.21	0.01	0.77	0	G	0.77
274	0	0	0	1	T	1
275	0.03	0	0.97	0	G	0.97
276	0	0.67	0	0.33	C	0.67
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.61	0	0.39	C	0.61
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.99	0	0.01	C	0.99
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.05	0	0.95	T	0.95
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.99	0	0.01	C	0.99
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.05	0	0.95	T	0.95
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.01	0.8	0.01	0.19	C	0.8
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.83	0	0.17	C	0.83
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.01	0	0.99	0	G	0.99
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.92	0	0.08	0	A	0.92
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.93	0	0.06	C	0.93
313	0.07	0.05	0.03	0.85	T	0.85
314	0.02	0	0.91	0.07	G	0.91
315	0	0.97	0	0.03	C	0.97
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.14	0.07	0.01	0.78	T	0.78
322	0.08	0	0.92	0	G	0.92
323	1	0	0	0	A	1
324	0.73	0.24	0.01	0.01	A	0.73
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	0.99	0	0.01	C	0.99
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.05	0	0.94	0	G	0.94
331	0	0.97	0.01	0.01	C	0.97
332	1	0	0	0	A	1
333	0.01	0	0.99	0	G	0.99
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.04	0.08	0.71	0.18	G	0.71
337	0	1	0	0	C	1
338	0.99	0	0.01	0	A	0.99
339	0	0.99	0	0.01	C	0.99
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	0.99	0	0.01	0	A	0.99
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.33	0.13	0.52	0.02	G	0.52
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.08	0	0.92	0	G	0.92
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0.01	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.05	0	0.92	0.02	G	0.92
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.91	0	0.09	C	0.91
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.63	0.01	0.36	C	0.63
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0.08	0.46	0.44	0.03	C	0.46
368	1	0	0	0	A	1
369	0	0.06	0	0.94	T	0.94
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.86	0	0.14	0	A	0.86
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.89	0.01	0.1	C	0.89
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.99	0	0.01	C	0.99
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.68	0	0.32	C	0.68
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.04	0	0.96	T	0.96
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	1	0	0	C	1
388	0.12	0.01	0.01	0.86	T	0.86
389	0	0	1	0	G	1
390	0	0.64	0	0.36	C	0.64
391	0.03	0	0.97	0	G	0.97
392	1	0	0	0	A	1
393	0	0.09	0	0.91	T	0.91
394	0.27	0	0.73	0	G	0.73
395	0.69	0.31	0	0	A	0.69
396	0	1	0	0	C	1
397	0	0.96	0.04	0	C	0.96
398	0	1	0	0	C	1
399	0.31	0.02	0.65	0.02	G	0.65
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.62	0.01	0.37	0	A	0.62
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	0.99	0	0.01	0	A	0.99
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0.96	0.03	0.01	C	0.96
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.89	0	0.11	0	A	0.89
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	0.99	0	0	C	0.99
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.04	0.23	0.71	0.03	G	0.71
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.99	0	0.01	C	0.99
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.81	0	0.19	C	0.81
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.94	0	0.06	C	0.94
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0.01	0	0.99	T	0.99
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.02	0	0.98	T	0.98
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.98	0	0.02	C	0.98
451	0	1	0	0	C	1
452	0.99	0	0	0.01	A	0.99
453	0.01	0.05	0.03	0.92	T	0.92
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.94	0	0.06	C	0.94
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAACTTAGAACAGTTCCGGCAGGTTTACCCCTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGGAAACCGACACCACC---ACCGACGCGCTGTTTGTCGGCCATCGCCGCTACTTTGAGGTGCATTACTACCTGCAGGGGCAGCAAAAAATTGAATTTGCCGCCAAAGACCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGC---GGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACCATGAAGCCTACCGCTTTATCTGCGATGACCCGGTA------AAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAACTTAGAACAGTTCCGGCAGGTTTACCCCTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGGAAACCGACACCACCACCGACGCGCTGTTTGTCGGCCATCGCCGCTACTTTGAGGTGCATTACTACCTGCAGGGGCAGCAAAAAATTGAATTTGCCGCCAAAGACCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGCGGTGAAACCGTGCAGGTGCACGAAGGGCAGATGGTGATTTGCGACAACCATGAAGCCTACCGCTTTATCTGCGATGACCCGGTAAAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The accuracy score for that sequence is 0.94448888888889

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 1.00049255999419e-13.
The natural log of that probability is -29.9331137701963.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	0.99	S	0.01	99	
I	1	A	0	9999	
L	0.99	I	0.01	99	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
R	0.613676	Q	0.364914	1.68170034583491	
Q	0.931095	X	0.01962	47.4564220183486	
V	0.77	I	0.12	6.41666666666667	
Y	1	A	0	9999	
P	0.91	R	0.06	15.1666666666667	
S	0.73953	T	0.213444	3.46474953617811	
G	1	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.87	I	0.1131	7.69230769230769	
E	1	A	0	9999	
A	0.99	R	0	9999	
I	1	A	0	9999	
K	0.6205	N	0.2295	2.7037037037037	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	0.9702	R	0.02	48.51	
P	1.01	A	0	9999	
G	1	A	0	9999	
V	1	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	1	A	0	9999	
L	1	A	0	9999	
A	0.9	T	0.1	9	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
E	0.700245	D	0.164255	4.26315789473684	
T	1	A	0	9999	
D	0.99	A	0	9999	
T	0.8544	A	0.0672	12.7142857142857	
T	0.95	A	0.05	19	
	0	-	0	0
T	0.99	A	0.01	99	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	0.9603	A	0.0297	32.3333333333333	
G	1	A	0	9999	
H	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	0.99	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
Q	0.8455	X	0.057036	14.8239708254436	
Q	1	A	0	9999	
K	1	A	0	9999	
I	0.99	A	0	9999	
E	1	A	0	9999	
F	0.715473	Y	0.264627	2.7037037037037	
A	1.01	R	0	9999	
A	0.9405	P	0.0198	47.5	
K	1	A	0	9999	
D	0.443718	E	0.221859	2	
Q	0.4386	K	0.258	1.7	
L	1	A	0	9999	
Q	0.99	R	0.01	99	
V	0.4774	A	0.2926	1.63157894736842	
V	1	A	0	9999	
E	0.98	D	0.01	98	
C	0.97	Y	0.03	32.3333333333333	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1.01	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	0.99	A	0	9999	
C	0.7735	S	0.0637	12.1428571428571	
	0	-	0	0
G	1	A	0	9999	
E	0.6808	D	0.23	2.96	
T	1	A	0	9999	
V	0.99	A	0	9999	
Q	0.97	E	0.01	97	
V	1.01	A	0	9999	
H	0.99	R	0.01	99	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.99	I	0.01	99	
V	0.99	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	0.99	E	0.01	99	
N	1	A	0	9999	
H	0.46	D	0.44	1.04545454545455	Unreliable
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
C	0.86	S	0.12	7.16666666666667	
D	0.97	N	0.03	32.3333333333333	
D	0.5037	A	0.2263	2.2258064516129	
P	0.96	A	0.04	24	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	0.99	A	0	9999	
K	1	A	0	9999	
V	1.01	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
H	0.9603	Q	0.0396	24.25	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFRQVYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVETDTT-TDALFVGHRRYFEVHYYLQGQQKIEFAAKDQLQVVECYRDETDREYLKGC-GETVQVHEGQMVICDNHEAYRFICDDPV--KKVVLKVTIEDGYFHNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFRQVYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVETDTTTDALFVGHRRYFEVHYYLQGQQKIEFAAKDQLQVVECYRDETDREYLKGCGETVQVHEGQMVICDNHEAYRFICDDPVKKVVLKVTIEDGYFHNKX

The accuracy score for that sequence is 0.957596246666666

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.000314929782311183
The natural log of that probability is -8.06316085728533.

